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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q8h AO9 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q8h AO92-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.924
3p0z CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.774
3t80 CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.724
3k2x I5A2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.713
3ke1 8292-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.709
3f0f C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.691
3f0g C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.689
4c8g C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.688
1iv2 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.677
1iv4 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.673
3iew CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.671
2amt 1AA2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.668
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.650