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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q60 ATP Rhoptry protein 5B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q60 ATPRhoptry protein 5B / 1.184
4lv8 ADPRhoptry protein 5 C / 0.884
4lv5 ADPRhoptry protein 5B / 0.791
1b38 ATPCyclin-dependent kinase 2 2.7.11.22 0.722
4m69 ANPReceptor-interacting serine/threonine-protein kinase 3 2.7.11.1 0.688
3lct ADPALK tyrosine kinase receptor 2.7.10.1 0.667
1b39 ATPCyclin-dependent kinase 2 2.7.11.22 0.664
1f3l SAHProtein arginine N-methyltransferase 3 / 0.661
4xhg ADPUncharacterized protein / 0.661
3c50 ADPRhodopsin kinase / 0.658
1s4o GDPGlycolipid 2-alpha-mannosyltransferase / 0.656
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.656
1jbp ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
2gs7 ANPEpidermal growth factor receptor 2.7.10.1 0.652