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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3po6 DT9 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.947
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.711
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.705
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.703
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.700
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.700
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.698
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.690
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.689
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.688
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.687
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.685
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.682
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.678
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.678
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.677
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.672
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.671
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.670
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.669
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.669
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.668
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.667
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.666
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.662
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.661
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.661
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.659
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.657
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.657
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.656
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.655
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.655
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.654
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.653
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.651
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.650