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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pfh T3Q dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase 2.1.1.235

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pfh T3QdTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase 2.1.1.235 1.377
3px2 T3QdTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase 2.1.1.235 1.310
3px3 T3QdTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase 2.1.1.235 1.291
3bxo UPPdTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose / 0.706
1xbt TTPThymidine kinase, cytosolic 2.7.1.21 0.685
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.653