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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pe2 E1B Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pe2 E1BCasein kinase II subunit alpha 2.7.11.1 1.062
3pe1 3NGCasein kinase II subunit alpha 2.7.11.1 1.000
3r0t FU9Casein kinase II subunit alpha 2.7.11.1 0.982
3nga 3NGCasein kinase II subunit alpha 2.7.11.1 0.933
3axw TIDCasein kinase II subunit alpha 2.7.11.1 0.825
3bqr 4RBDeath-associated protein kinase 3 / 0.742
2e9o A58Serine/threonine-protein kinase Chk1 2.7.11.1 0.721
4grb 0XGCasein kinase II subunit alpha 2.7.11.1 0.698
2xkd T3MSerine/threonine-protein kinase Nek2 2.7.11.1 0.695
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.695
1m2q MNXCasein kinase II subunit alpha 2.7.11.1 0.667
2wqo VGKSerine/threonine-protein kinase Nek2 2.7.11.1 0.666
4f79 P53Putative phospho-beta-glucosidase / 0.663
4do0 DZAHistone lysine demethylase PHF8 1.14.11.27 0.661
3at3 ATKCasein kinase II subunit alpha 2.7.11.1 0.660
2nru T12Interleukin-1 receptor-associated kinase 4 2.7.11.1 0.659
2xiz XIZSerine/threonine-protein kinase pim-1 2.7.11.1 0.658
3mb6 01ICasein kinase II subunit alpha 2.7.11.1 0.657
3bgz VX3Serine/threonine-protein kinase pim-1 2.7.11.1 0.652