Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pd3 A3T Threonine--tRNA ligase 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 1.024
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.967
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.904
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.894
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.848
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.805
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.791
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.782
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.777
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.771
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.770
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.768
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.767
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.767
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.749
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.747
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.739
3pd5 TSBThreonine--tRNA ligase 6.1.1.3 0.730
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.730
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.715
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.712
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.709
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.691
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.682
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.669
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.665