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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p82 FMN Pentaerythritol tetranitrate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3p82 FMNPentaerythritol tetranitrate reductase / 1.338
3p62 FMNPentaerythritol tetranitrate reductase / 1.181
1h63 FMNPentaerythritol tetranitrate reductase / 1.153
3p74 FMNPentaerythritol tetranitrate reductase / 1.134
1h50 FMNPentaerythritol tetranitrate reductase / 1.122
3p8i FMNPentaerythritol tetranitrate reductase / 1.099
1vyr FMNPentaerythritol tetranitrate reductase / 1.095
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 1.094
3p84 FMNPentaerythritol tetranitrate reductase / 1.088
2abb FMNPentaerythritol tetranitrate reductase / 1.087
3p8j FMNPentaerythritol tetranitrate reductase / 1.042
1h51 FMNPentaerythritol tetranitrate reductase / 1.031
3f03 FMNPentaerythritol tetranitrate reductase / 1.009
3p67 FMNPentaerythritol tetranitrate reductase / 0.997
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.993
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.969
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.966
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.965
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.940
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.937
4tmc FMNOld yellow enzyme / 0.932
4e2d FMNDehydrogenase / 0.917
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.916
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.915
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.907
3atz FMNProstaglandin F2a synthase / 0.906
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.906
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.905
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.898
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.894
3gka FMNN-ethylmaleimide reductase / 0.848
3l67 FMNXenobiotic reductase / 0.848
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.845
4utm FNRXenobiotic reductase / 0.844
3l5l FMNXenobiotic reductase / 0.838
1gwj FMNMorphinone reductase / 0.835
4uth FMNXenobiotic reductase / 0.824
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.822
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.818
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.815
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.814
4qai FMNNADPH dehydrogenase / 0.814
5cpm FNRNADH:flavin oxidoreductase / 0.804
4utk FNRXenobiotic reductase / 0.792
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.791
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.788
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.787
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.779
4utl FNRXenobiotic reductase / 0.778
4df2 FMNNADPH dehydrogenase / 0.775
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.759
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.757
3hf3 FMNChromate reductase / 0.757
2du2 FMNLactate oxidase / 0.756
3n19 FNRXenobiotic reductase / 0.753
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.751
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.750
1z41 FMNNADPH dehydrogenase / 0.749
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.749
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.745
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.744
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.743
3tjl FMNNADPH dehydrogenase / 0.742
4m5p FMNNADPH dehydrogenase / 0.741
3n14 FMNXenobiotic reductase / 0.740
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.737
1z48 FMNNADPH dehydrogenase / 0.737
1z44 FMNNADPH dehydrogenase / 0.735
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.735
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.732
3gr8 FMNNADPH dehydrogenase / 0.730
4yco FMNtRNA-dihydrouridine(16) synthase / 0.729
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.728
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.727
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.726
5ebu FMNLactate oxidase / 0.725
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.723
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.722
2h8x FMNXenA / 0.722
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.721
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.719
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.714
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.712
4rje FNRLactate oxidase / 0.712
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.712
2z6i FMN2-nitropropane dioxygenase / 0.708
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.708
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.707
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.707
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.706
1vhn FMNtRNA-dihydrouridine synthase / 0.702
2gjl FMNNitronate monooxygenase 1.13.12.16 0.698
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.694
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.694
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.694
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.694
3w77 FMNFMN-dependent NADH-azoreductase / 0.693
2e77 FMNLactate oxidase / 0.691
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.691
2j6x FMNLactate oxidase / 0.688
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.687
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.687
4e2b FMNDehydrogenase / 0.684
4yl2 FMNLactate oxidase / 0.683
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.680
3oix FMNDihydroorotate dehydrogenase / 0.680
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.678
4q4k FMNUncharacterized protein / 0.676
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.675
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.675
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.674
4hj4 FMNLOV protein / 0.674
4z38 FMNMlnA / 0.672
4yaf 2AMNADPH--cytochrome P450 reductase / 0.670
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.668
3q7d NPXProstaglandin G/H synthase 2 1.14.99.1 0.666
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.665
3gfz FMNUncharacterized protein / 0.664
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.663
5i39 FADL-amino acid deaminase / 0.662
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.661
4g1c CNANAD-dependent protein deacylase sirtuin-5, mitochondrial / 0.658
2nli FMNLactate oxidase / 0.655
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.655
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.654
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.653
4jic FMNGTN Reductase / 0.652
3p7n FMNLight-activated DNA-binding protein EL222 / 0.651
4cw5 FMNDfnA / 0.651