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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p2o NAD Bifunctional protein FolD

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3p2o NADBifunctional protein FolD / 0.882
1a4i NDPC-1-tetrahydrofolate synthase, cytoplasmic 1.5.1.5 0.694
1gz4 ATPNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.675
1llq NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.674
5bqf NAPProbable hydroxyacid dehydrogenase protein / 0.670
1o0s NAINAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.666
4xgi NADGlutamate dehydrogenase / 0.660
4ebf NADPhosphonate dehydrogenase 1.20.1.1 0.659
3ngl NAPBifunctional protein FolD / 0.653