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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oim VZ5 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.994
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.935
2x7u WZACarbonic anhydrase 2 4.2.1.1 0.756
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.754
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.727
3myq E27Carbonic anhydrase 2 4.2.1.1 0.720
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.696
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.691
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.690
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.689
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.686
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.685
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.680
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.673
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.668
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.665
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.665
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.663
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.658
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.654
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.652
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.652
3mho J43Carbonic anhydrase 2 4.2.1.1 0.650