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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3o5t ADP Nitrogen regulatory protein P-II 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3o5t ADPNitrogen regulatory protein P-II 1 / 0.847
4cnz ADPNitrogen regulatory protein P-II 1 / 0.770
1uuo BRFDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.669
3fvu IACKynurenine--oxoglutarate transaminase 1 2.6.1.7 0.668
2hu4 G39Neuraminidase / 0.666
3ta1 ADPNitrogen regulatory protein P-II (GlnB-3) / 0.661
2p1o NLAProtein TRANSPORT INHIBITOR RESPONSE 1 / 0.657
1eqg IBPProstaglandin G/H synthase 1 1.14.99.1 0.655
2e82 IM3D-amino-acid oxidase 1.4.3.3 0.654
3mvw BHZNickel-binding periplasmic protein / 0.654
1eqh FLPProstaglandin G/H synthase 1 1.14.99.1 0.653
3mz9 BHNNickel-binding periplasmic protein / 0.653
3mzb BHRNickel-binding periplasmic protein / 0.653
1jmf UMPThymidylate synthase / 0.652
2ayl FLPProstaglandin G/H synthase 1 1.14.99.1 0.652
2rdn 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 0.652
2ay3 MPPAromatic-amino-acid aminotransferase 2.6.1.57 0.651
3mw0 BHRNickel-binding periplasmic protein / 0.651