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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nod H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.763
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1qom H4BNitric oxide synthase, inducible 1.14.13.39 0.717
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.686
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.680
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.673
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.671
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.670
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.669
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.664
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.664
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.662
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.660
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.658
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.658
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.656
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.654
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.653
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.653
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.652
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.652
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.652
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.652
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.652
3av7 KYAUncharacterized protein / 0.651
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.651
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.651
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.650
3k31 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.650
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.650
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.650