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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n8z FLP Prostaglandin G/H synthase 1 1.14.99.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n8z FLPProstaglandin G/H synthase 1 1.14.99.1 1.105
1eqh FLPProstaglandin G/H synthase 1 1.14.99.1 0.896
1q4g BFLProstaglandin G/H synthase 1 1.14.99.1 0.875
1eqg IBPProstaglandin G/H synthase 1 1.14.99.1 0.856
3n8w FLPProstaglandin G/H synthase 1 1.14.99.1 0.854
2ayl FLPProstaglandin G/H synthase 1 1.14.99.1 0.853
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.815
1ht5 FL2Prostaglandin G/H synthase 1 1.14.99.1 0.811
3pgh FLPProstaglandin G/H synthase 2 1.14.99.1 0.768
4fm5 DF0Prostaglandin G/H synthase 2 1.14.99.1 0.761
1ht8 34CProstaglandin G/H synthase 1 1.14.99.1 0.733
3q7d NPXProstaglandin G/H synthase 2 1.14.99.1 0.709
2tpl HPPTyrosine phenol-lyase 4.1.99.2 0.662
3au2 DGTDNA polymerase beta family (X family) / 0.654
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.650