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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n0c FAD Flavin-dependent thymidylate synthase 2.1.1.148

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n0c FADFlavin-dependent thymidylate synthase 2.1.1.148 1.375
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 1.290
3g4a FADFlavin-dependent thymidylate synthase 2.1.1.148 1.199
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 1.175
1o29 FADFlavin-dependent thymidylate synthase 2.1.1.148 1.140
4gte FADFlavin-dependent thymidylate synthase 2.1.1.148 0.981
1kq4 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.965
4gtl FADFlavin-dependent thymidylate synthase 2.1.1.148 0.928
4p5a FADFlavin-dependent thymidylate synthase / 0.903
2af6 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.872
3gwc FADFlavin-dependent thymidylate synthase 2.1.1.148 0.817
3ah5 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.813
4kar FADFlavin-dependent thymidylate synthase 2.1.1.148 0.778
4p5b FADFlavin-dependent thymidylate synthase / 0.777
3hzg FADFlavin-dependent thymidylate synthase 2.1.1.148 0.701
2aky AP5Adenylate kinase / 0.663
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.652
2x86 ADPADP-L-glycero-D-manno-heptose-6-epimerase / 0.652
2eu8 AP5Adenylate kinase / 0.651
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.650