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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mn7 ATP Actin-5C

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mn7 ATPActin-5C / 1.061
3mn9 ATPActin-5C / 1.031
1s22 ATPActin, alpha skeletal muscle / 1.029
4k41 ATPActin, alpha skeletal muscle / 1.029
1qz5 ATPActin, alpha skeletal muscle / 1.028
3eku ATPActin-5C / 1.027
3a5o ATPMajor actin / 1.026
3eks ATPActin-5C / 1.013
4pki ATPActin, alpha skeletal muscle / 1.012
1dej ATPMajor actin / 1.011
1c0f ATPMajor actin / 1.010
2q36 ATPActin, alpha skeletal muscle / 0.998
2q97 ATPActin, alpha skeletal muscle / 0.996
4pkg ATPActin, alpha skeletal muscle / 0.996
4cbx ATPActin-2 / 0.988
3w3d ATPActin, gamma-enteric smooth muscle / 0.979
5ce3 ATPActin / 0.979
4pl8 ATPActin, alpha skeletal muscle / 0.968
3chw ATPMajor actin / 0.959
4b1v ATPActin, alpha skeletal muscle / 0.955
1t44 ATPActin, alpha skeletal muscle / 0.952
3ffk ATPActin, alpha skeletal muscle / 0.951
3el2 ATPActin-5C / 0.942
3daw ATPActin, alpha skeletal muscle / 0.941
3mn6 ATPActin-5C / 0.937
1mdu ATPActin, alpha skeletal muscle / 0.931
2a41 ATPActin, alpha skeletal muscle / 0.928
3m1f ATPActin, alpha skeletal muscle / 0.918
2oan ATPActin, cytoplasmic 1 / 0.915
1atn ATPActin, alpha skeletal muscle / 0.914
1wua ATPActin, alpha skeletal muscle / 0.912
3m6g ATPActin, alpha skeletal muscle / 0.911
1nlv ATPMajor actin / 0.896
1kxp ATPActin, alpha skeletal muscle / 0.894
4ci6 ATPActin / 0.888
2p9k ATPActin-related protein 2 / 0.887
4pkh ADPActin, alpha skeletal muscle / 0.884
4m63 ATPActin-5C / 0.878
1h1v ATPActin, alpha skeletal muscle / 0.872
1lot ATPActin, alpha skeletal muscle / 0.860
2v51 ATPActin, alpha skeletal muscle / 0.855
1rgi ATPActin, alpha skeletal muscle / 0.849
1ijj ATPActin, alpha skeletal muscle / 0.827
3wt0 ATPCell division protein FtsA / 0.825
1nm1 ATPMajor actin / 0.802
1nmd ATPMajor actin / 0.799
4k42 ADPActin, alpha skeletal muscle / 0.795
3a5m ATPMajor actin / 0.775
4jhd ANPActin-5C / 0.761
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.759
4a62 ANPPlasmid segregation protein ParM / 0.754
1yxq ATPActin, alpha skeletal muscle / 0.740
1eqy ATPActin, alpha skeletal muscle / 0.737
4b9q ATPChaperone protein DnaK / 0.734
3wqt ANPCell division protein FtsA / 0.732
1rfq ATPActin, alpha skeletal muscle / 0.727
2fsn ADPArchaeal actin homolog / 0.717
2zgy GDPPlasmid segregation protein ParM / 0.697
4k43 ADPActin, alpha skeletal muscle / 0.694
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.691
3tu5 ATPActin, alpha skeletal muscle / 0.686
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.685
4a61 ANPPlasmid segregation protein ParM / 0.681
2zgz GNPPlasmid segregation protein ParM / 0.675
3u4l ATPActin, cytoplasmic 1 / 0.675
3ule ATPActin-related protein 2 / 0.675
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.672
2whq HI6Acetylcholinesterase 3.1.1.7 0.666
3d2e ATPHeat shock protein homolog SSE1 / 0.658
1mwm ADPPlasmid segregation protein ParM / 0.656
3ldo ANP78 kDa glucose-regulated protein / 0.656
2yeg XQGHeat shock protein HSP 90-alpha / 0.654
4iyg 1HUStrictosidine synthase 4.3.3.2 0.652
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.650