Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mn6 ATP Actin-5C

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mn6 ATPActin-5C / 1.095
3mn9 ATPActin-5C / 1.054
1qz5 ATPActin, alpha skeletal muscle / 1.050
3a5o ATPMajor actin / 1.047
3chw ATPMajor actin / 1.046
4pki ATPActin, alpha skeletal muscle / 1.034
1c0f ATPMajor actin / 1.032
2a41 ATPActin, alpha skeletal muscle / 1.028
4pkg ATPActin, alpha skeletal muscle / 1.026
1dej ATPMajor actin / 1.022
4k41 ATPActin, alpha skeletal muscle / 1.022
1s22 ATPActin, alpha skeletal muscle / 1.020
3m6g ATPActin, alpha skeletal muscle / 1.020
4b1v ATPActin, alpha skeletal muscle / 1.015
3eks ATPActin-5C / 1.001
3el2 ATPActin-5C / 0.998
3eku ATPActin-5C / 0.989
4pl8 ATPActin, alpha skeletal muscle / 0.987
5ce3 ATPActin / 0.985
1eqy ATPActin, alpha skeletal muscle / 0.983
1t44 ATPActin, alpha skeletal muscle / 0.983
1wua ATPActin, alpha skeletal muscle / 0.981
1kxp ATPActin, alpha skeletal muscle / 0.980
2v51 ATPActin, alpha skeletal muscle / 0.971
3w3d ATPActin, gamma-enteric smooth muscle / 0.971
2q36 ATPActin, alpha skeletal muscle / 0.970
4cbx ATPActin-2 / 0.965
1nlv ATPMajor actin / 0.964
3m1f ATPActin, alpha skeletal muscle / 0.964
2q97 ATPActin, alpha skeletal muscle / 0.961
3tu5 ATPActin, alpha skeletal muscle / 0.945
3mn7 ATPActin-5C / 0.937
3daw ATPActin, alpha skeletal muscle / 0.928
1mdu ATPActin, alpha skeletal muscle / 0.921
4m63 ATPActin-5C / 0.920
2oan ATPActin, cytoplasmic 1 / 0.919
1atn ATPActin, alpha skeletal muscle / 0.914
2p9k ATPActin-related protein 2 / 0.897
1rgi ATPActin, alpha skeletal muscle / 0.887
4pkh ADPActin, alpha skeletal muscle / 0.871
1ijj ATPActin, alpha skeletal muscle / 0.870
3ffk ATPActin, alpha skeletal muscle / 0.863
1lot ATPActin, alpha skeletal muscle / 0.862
1nm1 ATPMajor actin / 0.849
3a5m ATPMajor actin / 0.835
1yxq ATPActin, alpha skeletal muscle / 0.832
3wt0 ATPCell division protein FtsA / 0.822
4ci6 ATPActin / 0.812
4k42 ADPActin, alpha skeletal muscle / 0.812
1nmd ATPMajor actin / 0.799
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.779
1rfq ATPActin, alpha skeletal muscle / 0.774
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.750
4jhd ANPActin-5C / 0.736
1h1v ATPActin, alpha skeletal muscle / 0.726
4a61 ANPPlasmid segregation protein ParM / 0.721
2zgz GNPPlasmid segregation protein ParM / 0.720
1mwm ADPPlasmid segregation protein ParM / 0.717
3wqt ANPCell division protein FtsA / 0.716
3u4l ATPActin, cytoplasmic 1 / 0.712
4k43 ADPActin, alpha skeletal muscle / 0.706
3ule ATPActin-related protein 2 / 0.703
2e2q ADPATP-dependent hexokinase / 0.700
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.699
2zgy GDPPlasmid segregation protein ParM / 0.695
4to4 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.690
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.673
3ez3 IPEFarnesyl pyrophosphate synthase, putative / 0.659
2fsn ADPArchaeal actin homolog / 0.657
5eoy ADPType 4 fimbrial biogenesis protein PilM / 0.657
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.656
4xjc TTPdCTP deaminase / 0.654