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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mj4 URM UDP-galactopyranose mutase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mj4 URMUDP-galactopyranose mutase / 1.162
3hdq GDUUDP-galactopyranose mutase / 0.753
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.744
4rpg GDUUDP-galactopyranose mutase 5.4.99.9 0.719
3hdy GDUUDP-galactopyranose mutase / 0.698
4rph GDUUDP-galactopyranose mutase 5.4.99.9 0.669
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.667
3v0p 4GWHisto-blood group ABO system transferase / 0.666
3zgf IUGHisto-blood group ABO system transferase / 0.666
5c47 URMHisto-blood group ABO system transferase / 0.666
5c48 URMHisto-blood group ABO system transferase / 0.661
5c1h GDUHisto-blood group ABO system transferase / 0.660
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.659
5c4b UPGHisto-blood group ABO system transferase / 0.656
5c1g GDUHisto-blood group ABO system transferase / 0.653