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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lli FAD Sulfhydryl oxidase 1 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lli FADSulfhydryl oxidase 1 1.8.3.2 1.337
3llk FADSulfhydryl oxidase 1 1.8.3.2 1.152
3t58 FADSulfhydryl oxidase 1 1.8.3.2 1.045
3t59 FADSulfhydryl oxidase 1 1.8.3.2 1.022
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.942
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.916
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.906
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.903
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.899
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.897
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.888
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.869
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.867
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.863
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.860
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.854
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.842
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.839
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.834
3ust FADAcMNPV orf92 / 0.783
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.756
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.733
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.726
3qzy FADFAD-linked sulfhydryl oxidase / 0.693
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.684
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.656
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.650