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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3liv E16 Protease

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3liv E16Protease / 1.382
3liq E14Protease / 1.172
3lit E15Protease / 1.154
3lin E13Protease / 1.112
3lix E17Protease / 1.110
1hpx KNIGag-Pol polyprotein / 0.792
2pk6 O33V-1 protease / 0.749
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.740
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.740
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.728
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.721
2pk5 075Protease / 0.718
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.717
2cem 2AHPol protein / 0.715
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.715
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.713
1msm JE2Gag-Pol polyprotein 3.4.23.16 0.710
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.708
2cen 4AHProtease / 0.707
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.706
2fxd DR7Pol polyprotein / 0.705
2wkz 5AHGag-Pol polyprotein / 0.705
2q5k AB1Protease / 0.697
1mrx K57Gag-Pol polyprotein 3.4.23.16 0.695
3gga GGWGag-Pol polyprotein / 0.691
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.689
1hsg MK1Gag-Pol polyprotein / 0.686
1hih C20Gag-Pol polyprotein / 0.684
1bv7 XV6Gag-Pol polyprotein 3.4.23.16 0.681
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.680
4k4p 3TLGag-Pol polyprotein / 0.680
1hvs A77Gag-Pol polyprotein / 0.679
3kdd JZQGag-Pol polyprotein 3.4.23.16 0.679
2p3b 3TLV-1 PROTEASE protein / 0.678
2p3b 3TLV-1 protease / 0.678
3tlh 3TLGag-Pol polyprotein 3.4.23.16 0.677
2wl0 5AHGag-Pol polyprotein / 0.676
3kf0 3TLGag-Pol polyprotein / 0.676
2rkg AB1Pol protein / 0.675
1rl8 RITGag-Pol polyprotein 3.4.23.16 0.671
1vij BAYGag-Pol polyprotein / 0.671
3nls 016Gag-Pol polyprotein 3.4.23.16 0.668
1t7j 478Gag-Pol polyprotein 3.4.23.16 0.665
1b11 3TLPol polyprotein / 0.662
1hxw RITGag-Pol polyprotein / 0.662
4qgi ROCGag-Pol polyprotein 3.4.23.16 0.662
3kdb 006Gag-Pol polyprotein 3.4.23.16 0.660
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.657
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.657
3dcr KVSProtease / 0.657
1hsh MK1Gag-Pol polyprotein / 0.656
1mrw K57Gag-Pol polyprotein 3.4.23.16 0.656
1dif A85Gag-Pol polyprotein / 0.655
1vik BAYGag-Pol polyprotein / 0.653
3kfn 3TLGag-Pol polyprotein / 0.653
1a8k 0Q4Gag-Pol polyprotein 3.4.23.16 0.650
1hii C20Gag-Pol polyprotein / 0.650
2fle AIProtease / 0.650