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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lit E15 Protease

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lit E15Protease / 1.401
3liq E14Protease / 1.213
3liv E16Protease / 1.154
3lin E13Protease / 1.036
3lix E17Protease / 1.012
1hpx KNIGag-Pol polyprotein / 0.761
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.735
2p3b 3TLV-1 PROTEASE protein / 0.728
2p3b 3TLV-1 protease / 0.728
2pk6 O33V-1 protease / 0.724
1vij BAYGag-Pol polyprotein / 0.722
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.719
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.718
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.716
2fxd DR7Pol polyprotein / 0.714
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.708
1msm JE2Gag-Pol polyprotein 3.4.23.16 0.703
2p3c 3TLProtease / 0.697
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.691
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.691
2f81 017Gag-Pol polyprotein 3.4.23.16 0.690
2bpz 3INGag-Pol polyprotein 3.4.23.16 0.688
1hsg MK1Gag-Pol polyprotein / 0.687
1rl8 RITGag-Pol polyprotein 3.4.23.16 0.687
3d20 017Gag-Pol polyprotein 3.4.23.16 0.686
3ekp 478Gag-Pol polyprotein 3.4.23.16 0.686
1hih C20Gag-Pol polyprotein / 0.684
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.683
1t7j 478Gag-Pol polyprotein 3.4.23.16 0.682
2pk5 075Protease / 0.682
2bpy 3INGag-Pol polyprotein 3.4.23.16 0.681
3tlh 3TLGag-Pol polyprotein 3.4.23.16 0.681
3ttp 017Gag-Pol polyprotein 3.4.23.16 0.681
2cem 2AHPol protein / 0.680
3slz 3TLPutative gag-pro-pol polyprotein / 0.680
1daz 0Q4Gag-Pol polyprotein 3.4.23.16 0.678
1hvs A77Gag-Pol polyprotein / 0.675
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.675
3bvb 017Gag-Pol polyprotein 3.4.23.16 0.673
3nls 016Gag-Pol polyprotein 3.4.23.16 0.673
1zsr 0ZTGag-Pol polyprotein 3.4.23.16 0.671
2fmb LP1Reverse transcriptase / 0.671
2az8 3TLGag-Pol polyprotein 3.4.23.16 0.670
3kdc JZPGag-Pol polyprotein 3.4.23.16 0.670
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.669
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.668
2wl0 5AHGag-Pol polyprotein / 0.665
4dqb 017Gag-Pol polyprotein / 0.664
4dqe 017Gag-Pol polyprotein / 0.664
4dqh 017Gag-Pol polyprotein / 0.662
1ohr 1UNV-1 PROTEASE protein / 0.661
4a4q UX9Pol protein / 0.661
3dcr KVSProtease / 0.660
3kfr 3TLGag-Pol polyprotein / 0.660
3o9d K19Pol polyprotein / 0.660
4qgi ROCGag-Pol polyprotein 3.4.23.16 0.660
1hvi A77Protease / 0.659
1mrw K57Gag-Pol polyprotein 3.4.23.16 0.659
1k6v XN2Gag-Pol polyprotein 3.4.23.16 0.658
3o99 K13Pol polyprotein / 0.658
2ieo 017Protease / 0.657
1fb7 ROCGag-Pol polyprotein / 0.656
1fg6 2NCGag-Pol polyprotein 3.4.23.16 0.656
1fej 2NCGag-Pol polyprotein 3.4.23.16 0.653
2r5q 1UNGag-Pol polyprotein / 0.653
3kdd JZQGag-Pol polyprotein 3.4.23.16 0.653
3ndw RITGag-Pol polyprotein 3.4.23.16 0.652
1t7i 017Gag-Pol polyprotein 3.4.23.16 0.651
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.650
3kfn 3TLGag-Pol polyprotein / 0.650
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.650