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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3liq E14 Protease

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3liq E14Protease / 1.317
3lit E15Protease / 1.213
3liv E16Protease / 1.172
3lin E13Protease / 1.075
3lix E17Protease / 1.064
1hpx KNIGag-Pol polyprotein / 0.770
2p3b 3TLV-1 PROTEASE protein / 0.753
2p3b 3TLV-1 protease / 0.753
2p3c 3TLProtease / 0.745
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.740
3slz 3TLPutative gag-pro-pol polyprotein / 0.740
2fxd DR7Pol polyprotein / 0.739
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.726
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.723
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.722
1hih C20Gag-Pol polyprotein / 0.721
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.717
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.716
3tlh 3TLGag-Pol polyprotein 3.4.23.16 0.715
2pk6 O33V-1 protease / 0.714
2pk5 075Protease / 0.706
2p3a 3TLPol protein / 0.704
4k4p 3TLGag-Pol polyprotein / 0.703
1daz 0Q4Gag-Pol polyprotein 3.4.23.16 0.699
3bvb 017Gag-Pol polyprotein 3.4.23.16 0.699
3kfp 3TLGag-Pol polyprotein / 0.699
3dcr KVSProtease / 0.698
3gga GGWGag-Pol polyprotein / 0.698
2az8 3TLGag-Pol polyprotein 3.4.23.16 0.697
1vij BAYGag-Pol polyprotein / 0.696
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.695
2cem 2AHPol protein / 0.693
3toh 079Gag-Pol polyprotein 2.7.7.49 0.693
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.692
3ttp 017Gag-Pol polyprotein 3.4.23.16 0.691
1hvi A77Protease / 0.690
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.689
1a94 0Q4Gag-Pol polyprotein 3.4.23.16 0.688
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.686
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.686
3kfr 3TLGag-Pol polyprotein / 0.685
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.684
1dw6 0Q4Gag-Pol polyprotein 3.4.23.16 0.682
4dqe 017Gag-Pol polyprotein / 0.682
1b11 3TLPol polyprotein / 0.680
1hvs A77Gag-Pol polyprotein / 0.678
2q5k AB1Protease / 0.675
3kf0 3TLGag-Pol polyprotein / 0.674
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.673
1zsr 0ZTGag-Pol polyprotein 3.4.23.16 0.673
2i4v DJRV-1 protease / 0.673
2bpy 3INGag-Pol polyprotein 3.4.23.16 0.672
3o99 K13Pol polyprotein / 0.672
1t7j 478Gag-Pol polyprotein 3.4.23.16 0.671
2bpz 3INGag-Pol polyprotein 3.4.23.16 0.671
1d4l PI9Gag-Pol polyprotein 3.4.23.16 0.668
1vik BAYGag-Pol polyprotein / 0.668
2f81 017Gag-Pol polyprotein 3.4.23.16 0.667
2rkg AB1Pol protein / 0.666
3nls 016Gag-Pol polyprotein 3.4.23.16 0.666
1fff 0Q4Gag-Pol polyprotein 3.4.23.16 0.664
2r5q 1UNGag-Pol polyprotein / 0.662
1hvl A76Gag-Pol polyprotein / 0.661
4dqh 017Gag-Pol polyprotein / 0.661
1hiv 1ZKGag-Pol polyprotein / 0.660
3o9d K19Pol polyprotein / 0.658
4njs G08Protease / 0.658
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.657
2i4d QFIProtease / 0.656
2qak 1UNGag-Pol polyprotein 3.4.23.16 0.656
1a8k 0Q4Gag-Pol polyprotein 3.4.23.16 0.655
1hii C20Gag-Pol polyprotein / 0.655
1hvj A78Gag-Pol polyprotein / 0.655
3kdb 006Gag-Pol polyprotein 3.4.23.16 0.654
4q1y 017Gag-Pol polyprotein 3.4.23.16 0.654
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.653
1hxw RITGag-Pol polyprotein / 0.652
2fdd 385Pol protein / 0.652
3o9e A60Pol polyprotein / 0.651
3o9f K2DGag-Pol polyprotein / 0.651
1t7i 017Gag-Pol polyprotein 3.4.23.16 0.650
3tog 079Gag-Pol polyprotein 2.7.7.49 0.650
3zpt M8YGag-Pol polyprotein 3.4.23.16 0.650