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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ldl ATP 78 kDa glucose-regulated protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ldl ATP78 kDa glucose-regulated protein / 0.979
5f1x ATP78 kDa glucose-regulated protein / 0.952
3ldo ANP78 kDa glucose-regulated protein / 0.929
1nge ATPHeat shock cognate 71 kDa protein / 0.887
1ngj ANPHeat shock cognate 71 kDa protein / 0.874
1ngi ANPHeat shock cognate 71 kDa protein / 0.869
1ngh ATPHeat shock cognate 71 kDa protein / 0.865
2qwl ADPHeat shock cognate 71 kDa protein / 0.802
2qwn ADPHeat shock cognate 71 kDa protein / 0.783
5f2r ACP78 kDa glucose-regulated protein / 0.776
3hsc ADPHeat shock cognate 71 kDa protein / 0.766
1ngc ADPHeat shock cognate 71 kDa protein / 0.762
1ats ADPHeat shock cognate 71 kDa protein / 0.751
1ngb ADPHeat shock cognate 71 kDa protein / 0.747
2qwq ADPHeat shock cognate 71 kDa protein / 0.735
1atr ADPHeat shock cognate 71 kDa protein / 0.725
2qwr ANPHeat shock cognate 71 kDa protein / 0.723
3fe1 ADPHeat shock 70 kDa protein 6 / 0.720
4k41 ATPActin, alpha skeletal muscle / 0.718
1s22 ATPActin, alpha skeletal muscle / 0.717
3m6g ATPActin, alpha skeletal muscle / 0.717
1ngd ADPHeat shock cognate 71 kDa protein / 0.712
4b9q ATPChaperone protein DnaK / 0.703
1nlv ATPMajor actin / 0.702
4h5t ADPHeat shock cognate 71 kDa protein / 0.702
1c0f ATPMajor actin / 0.700
4b1v ATPActin, alpha skeletal muscle / 0.700
1wua ATPActin, alpha skeletal muscle / 0.696
1qz5 ATPActin, alpha skeletal muscle / 0.691
4pl8 ATPActin, alpha skeletal muscle / 0.689
1dej ATPMajor actin / 0.688
1t44 ATPActin, alpha skeletal muscle / 0.685
4ci6 ATPActin / 0.684
4pkg ATPActin, alpha skeletal muscle / 0.683
4cbx ATPActin-2 / 0.682
3ule ATPActin-related protein 2 / 0.679
1lot ATPActin, alpha skeletal muscle / 0.677
3ffk ATPActin, alpha skeletal muscle / 0.674
3wt0 ATPCell division protein FtsA / 0.673
1rgi ATPActin, alpha skeletal muscle / 0.670
2q97 ATPActin, alpha skeletal muscle / 0.666
2v51 ATPActin, alpha skeletal muscle / 0.666
1kxp ATPActin, alpha skeletal muscle / 0.665
1atn ATPActin, alpha skeletal muscle / 0.662
1nm1 ATPMajor actin / 0.650