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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l0d NAD Glyceraldehyde-3-phosphate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l0d NADGlyceraldehyde-3-phosphate dehydrogenase / 0.987
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.747
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.742
4boy NADGlyceraldehyde-3-phosphate dehydrogenase / 0.725
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.719
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.718
2b4r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.717
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.715
4lsm NADGlyceraldehyde-3-phosphate dehydrogenase / 0.710
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.702
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.701
3zcx NADGlyceraldehyde-3-phosphate dehydrogenase / 0.699
3dmt NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.698
3v1y NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.697
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.697
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.695
1dc6 NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.687
1ywg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.686
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.682
4dbv NDPGlyceraldehyde-3-phosphate dehydrogenase / 0.679
1qxs NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.678
1vc2 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.678
4xb2 NDP319aa long hypothetical homoserine dehydrogenase / 0.678
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.677
1rm3 NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.677
1gyp NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.675
3doc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.672
3lvf NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.671
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.670
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.670
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.668
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.667
1znq NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.667
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.667
1dbv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.666
2ep7 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.665
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.664
4b7x NAPProbable oxidoreductase / 0.664
3adp NAILambda-crystallin 1.1.1.45 0.663
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.657
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.656
3zdf NADGlyceraldehyde-3-phosphate dehydrogenase / 0.656
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.655
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.653
3keq NADRedox-sensing transcriptional repressor Rex / 0.652
4kug NAD3-hydroxybutyryl-CoA dehydrogenase / 0.652
1gae NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.650
2o4c NADErythronate-4-phosphate dehydrogenase / 0.650
4xb1 NDP319aa long hypothetical homoserine dehydrogenase / 0.650