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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kqj UD1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kqj UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.310
3kr6 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.229
3lth UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.191
1uae UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.173
1a2n TETUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.025
1ryw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.018
3upk UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.002
1q3g UDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.001
3vcy UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.000
3swq EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.994
4r7u UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.978
3v4t UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.962
2yvw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.855
2rl1 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.841
2rl2 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.815
3iss EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.666
1mp5 UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.655