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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kb3 A8S Abscisic acid receptor PYL2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kb3 A8SAbscisic acid receptor PYL2 / 0.979
4ds8 A8SAbscisic acid receptor PYL3 / 0.871
4oic A8SBet v I allergen-like / 0.865
3kdj A8SAbscisic acid receptor PYL1 / 0.843
3kdi A8SAbscisic acid receptor PYL2 / 0.822
4dsc A8SAbscisic acid receptor PYL3 / 0.806
3w9r A8SAbscisic acid receptor PYL9 / 0.804
3ujl A8SAbscisic acid receptor PYL2 / 0.788
3oqu A8SAbscisic acid receptor PYL9 / 0.753
3zvu A8SAbscisic acid receptor PYR1 / 0.750
3qn1 A8SAbscisic acid receptor PYR1 / 0.739
3k3k A8SAbscisic acid receptor PYR1 / 0.731
3kb0 A8SAbscisic acid receptor PYL2 / 0.727
3k90 A8SAbscisic acid receptor PYR1 / 0.683
3r6p A8SAbscisic acid receptor PYL10 / 0.680
4lga A2OAbscisic acid receptor PYL2 / 0.662
4dsb A8SAbscisic acid receptor PYL3 / 0.652