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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ipk PMS Surface protein adhesin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ipk PMSSurface protein adhesin / 0.773
2ch2 KY1Serine--pyruvate aminotransferase / 0.677
1u5c BIKL-lactate dehydrogenase 1.1.1.27 0.664
1rb3 MTXDihydrofolate reductase 1.5.1.3 0.655
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.651
1drt PCVClavaminate synthase 1 1.14.11.21 0.650