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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3inx JZC Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3inx JZCHeat shock protein HSP 90-alpha / 1.180
3inw JZBHeat shock protein HSP 90-alpha / 0.861
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.807
4egk RDCHeat shock protein HSP 90-alpha / 0.801
1u0z RDCEndoplasmin / 0.752
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.750
1qy8 RDIEndoplasmin / 0.740
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.727
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.714
3eko PYUHeat shock protein HSP 90-alpha / 0.710
4bqj XKLHeat shock protein HSP 90-alpha / 0.708
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.697
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.683
3mnr SD1Heat shock protein HSP 90-alpha / 0.677
3d0b SNXHeat shock protein HSP 90-alpha / 0.674
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.671
2ye4 2FYHeat shock protein HSP 90-alpha / 0.662
2yei XQIHeat shock protein HSP 90-alpha / 0.662
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.656
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.652