Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iew CTP 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iew CTP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 1.072
3iew CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.885
4c8e C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.875
4c8g C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.835
3f0g C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.829
3ke1 8292-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.805
1iv4 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.788
1iv2 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.763
3f0f C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.759
1h47 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.753
2uzh CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.731
1gx1 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.717
2amt 1AA2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.713
3k2x I5A2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.695
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
3p0z CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.656
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.655
3t80 CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.653