Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i8p 840 3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i8p 8403-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.930
3hnz PMN3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.772
3g0y P9A3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.771
3ho9 N3A3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.764
3ho2 N323-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.755
3g11 P9C3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.753
2gfx PMN3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.750
4f32 N323-oxoacyl-[acyl-carrier-protein] synthase 2 / 0.734
4jv3 N32Beta-ketoacyl synthase / 0.704