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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i6i NDP Putative leucoanthocyanidin reductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i6i NDPPutative leucoanthocyanidin reductase 1 / 1.108
3i6q NDPPutative leucoanthocyanidin reductase 1 / 0.882
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.718
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.682
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.679
1x7h NDPPutative ketoacyl reductase 1.3.1 0.674
3p19 NDPPutative blue fluorescent protein / 0.666
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.664
1x7g NAPPutative ketoacyl reductase 1.3.1 0.660
3c3x NAPEugenol synthase 1 1.1.1.318 0.660
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.660
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.659
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.657
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.654
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.653
3uce NDPDehydrogenase / 0.652
5d2e NAPMlnE / 0.652
1bsv NDPGDP-L-fucose synthase / 0.651