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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hku TOR Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hku TORCarbonic anhydrase 2 4.2.1.1 0.918
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.782
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.718
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.703
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.693
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.692
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.692
3t84 SG6Carbonic anhydrase 2 4.2.1.1 0.688
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.684
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.678
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.676
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.676
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.675
4mo8 2VQCarbonic anhydrase 2 4.2.1.1 0.674
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.666
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.665
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.663
3t82 SG4Carbonic anhydrase 2 4.2.1.1 0.663
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.662
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.661
3mho J43Carbonic anhydrase 2 4.2.1.1 0.659
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.658
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.656
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.655
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.654
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.654
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.652
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.650
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.650