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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hat GLY_VAL_ARG_RNG Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 1.197
2zgx 29UProthrombin 3.4.21.5 0.807
2ziq 26UProthrombin 3.4.21.5 0.805
2zi2 24UProthrombin 3.4.21.5 0.791
4ban M6SProthrombin 3.4.21.5 0.789
1riw OSCProthrombin 3.4.21.5 0.785
4bah MELProthrombin 3.4.21.5 0.782
1ypl RA8Prothrombin 3.4.21.5 0.779
3biv 11UProthrombin 3.4.21.5 0.778
4bao MVFProthrombin 3.4.21.5 0.774
2zda 32UProthrombin 3.4.21.5 0.773
2zhw 12UProthrombin 3.4.21.5 0.768
4baq M4ZProthrombin 3.4.21.5 0.768
4e7r 0NWProthrombin 3.4.21.5 0.767
2zfr 46UProthrombin 3.4.21.5 0.765
1ypm RA4Prothrombin 3.4.21.5 0.760
4ax9 N5NProthrombin 3.4.21.5 0.756
2zhe 13UProthrombin 3.4.21.5 0.754
5cmx 0G6Prothrombin 3.4.21.5 0.751
1k22 MELProthrombin 3.4.21.5 0.749
1c5n ESIProthrombin 3.4.21.5 0.748
2zhq 27UProthrombin 3.4.21.5 0.744
3utu 1TSProthrombin 3.4.21.5 0.735
2zhf 49UProthrombin 3.4.21.5 0.732
1ypk CCRProthrombin 3.4.21.5 0.728
1oyt FSNProthrombin 3.4.21.5 0.722
1vzq SHYProthrombin 3.4.21.5 0.722
1c4v IH2Prothrombin 3.4.21.5 0.721
2cn0 F25Prothrombin 3.4.21.5 0.719
2v3h I25Prothrombin 3.4.21.5 0.718
4ayy 9MXProthrombin 3.4.21.5 0.717
1d4p BPPProthrombin 3.4.21.5 0.715
2cf8 ESHProthrombin 3.4.21.5 0.715
4bak M67Prothrombin 3.4.21.5 0.711
1ypg UIRProthrombin 3.4.21.5 0.710
2cf9 348Prothrombin 3.4.21.5 0.710
2gde SN3Prothrombin 3.4.21.5 0.709
2anm CDOProthrombin 3.4.21.5 0.703
3qdz PRO_ALA_PRO_ARGProthrombin 3.4.21.5 0.697
1c4u IH1Prothrombin 3.4.21.5 0.696
1wtg 3BPCoagulation factor VII 3.4.21.21 0.690
4ayv 9MQProthrombin 3.4.21.5 0.690
1ype UIPProthrombin 3.4.21.5 0.686
2v3o I26Prothrombin 3.4.21.5 0.681
4bam MM9Prothrombin 3.4.21.5 0.672
1d9i 00PProthrombin 3.4.21.5 0.670
1afe ALZProthrombin 3.4.21.5 0.669
1ypj UIBProthrombin 3.4.21.5 0.669
3biu 10UProthrombin 3.4.21.5 0.669
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.667
1ta2 176Prothrombin 3.4.21.5 0.667
1zsk 421Coagulation factor XI 3.4.21.27 0.666
1o0d 163Prothrombin 3.4.21.5 0.664
1sl3 170Prothrombin 3.4.21.5 0.663
1ae8 AZLProthrombin 3.4.21.5 0.662
2r2m I50Prothrombin 3.4.21.5 0.662
2zg0 50UProthrombin 3.4.21.5 0.661
2zfq 45UProthrombin 3.4.21.5 0.660
4az2 9MUProthrombin 3.4.21.5 0.660
2znk 31UProthrombin 3.4.21.5 0.659
2c4f GILCoagulation factor VII 3.4.21.21 0.657
1z71 L17Prothrombin 3.4.21.5 0.656
1mu8 CDBProthrombin 3.4.21.5 0.654
1jwt BLIProthrombin 3.4.21.5 0.653
2a2x NA9Prothrombin 3.4.21.5 0.651
7kme ACE_0BN_CHG_PRRProthrombin 3.4.21.5 0.650