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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h06 VBP Glutamate receptor 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3h06 VBPGlutamate receptor 2 / 0.999
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.727
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.713
3h03 UBPGlutamate receptor 2 / 0.712
4gxs 0YSGlutamate receptor 2 / 0.694
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.690
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.664
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.663
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.663
4gsy 0Y5Thymidylate kinase / 0.662
5ej8 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.660
1toi HCIAspartate aminotransferase 2.6.1.1 0.658
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.657
4kww PHTNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.655
4isu IKMGlutamate receptor 2 / 0.653
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.651
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.650
3zzh NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.650
4hh4 SAHCcbJ / 0.650