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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gwn FAD Probable FAD-linked sulfhydryl oxidase R596 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 1.140
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.844
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.787
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.774
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.773
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.768
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.752
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.749
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.747
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.746
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.733
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.730
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.730
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.716
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.709
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.690
3ust FADAcMNPV orf92 / 0.687
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.678
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.671
3qzy FADFAD-linked sulfhydryl oxidase / 0.671