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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gnv XNZ Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gnv XNZGenome polyprotein 2.7.7.48 1.021
3hky IX6Genome polyprotein 2.7.7.48 0.772
3hkw IX6Genome polyprotein 2.7.7.48 0.768
3gnw XNCGenome polyprotein 2.7.7.48 0.738
3gol XNDGenome polyprotein 2.7.7.48 0.691
3cso XNIGenome polyprotein 2.7.7.48 0.681
4ih6 1EPGenome polyprotein 2.7.7.48 0.660