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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ggg NAD Prephenate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ggg NADPrephenate dehydrogenase / 0.960
3ggp NADPrephenate dehydrogenase / 0.820
2g5c NADPrephenate dehydrogenase / 0.816
3ggo NAIPrephenate dehydrogenase / 0.745
3f3s NADLambda-crystallin homolog / 0.714
2hdh NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.690
1m75 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.689
2f1k NAPPrephenate dehydrogenase / 0.681
2pv7 NADT-protein 1.3.1.12 0.681
3hdh NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.680
4nd4 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.679
1m76 NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.678
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.677
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.677
2i9p NAD3-hydroxyisobutyrate dehydrogenase, mitochondrial 1.1.1.31 0.675
4kug NAD3-hydroxybutyryl-CoA dehydrogenase / 0.674
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.671
1lso NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.670
2eer NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.669
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.666
4nd2 A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.666
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.663
2vhz NAIAlanine dehydrogenase 1.4.1.1 0.662
4nd3 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.661
1f17 NAIHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.657
2ph5 NADHomospermidine synthase / 0.657
4cr8 NADN-acylmannosamine 1-dehydrogenase 1.1.1.233 0.654
4wlv NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.654
4om8 NAD3-hydroxybutyryl-coA dehydrogenase / 0.653
3q2k NAIProbable oxidoreductase / 0.651
1o6z NADMalate dehydrogenase / 0.650
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.650