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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g5i DNB Pyrimidine-specific ribonucleoside hydrolase RihA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g5i DNBPyrimidine-specific ribonucleoside hydrolase RihA / 1.006
3mkn DNBPyrimidine-specific ribonucleoside hydrolase RihB / 0.926
3b9g IMHIAG-nucleoside hydrolase / 0.923
1hp0 AD3IAG-nucleoside hydrolase / 0.836
3b9x NOSPyrimidine-specific ribonucleoside hydrolase RihB 3.2.2.8 0.795
3epx IMQIAG-nucleoside hydrolase / 0.769
1kie AD3IAG-nucleoside hydrolase / 0.765
1kic NOSIAG-nucleoside hydrolase / 0.676