1.600 Å
X-ray
2001-12-03
Name: | IAG-nucleoside hydrolase |
---|---|
ID: | Q9GPQ4_TRYVI |
AC: | Q9GPQ4 |
Organism: | Trypanosoma vivax |
Reign: | Eukaryota |
TaxID: | 5699 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 22.764 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | CA |
Ligandability | Volume (Å3) |
---|---|
0.616 | 678.375 |
% Hydrophobic | % Polar |
---|---|
47.26 | 52.74 |
According to VolSite |
HET Code: | NOS |
---|---|
Formula: | C10H12N4O5 |
Molecular weight: | 268.226 g/mol |
DrugBank ID: | DB04335 |
Buried Surface Area: | 63.51 % |
Polar Surface area: | 133.75 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-0.157421 | 3.16758 | 30.8466 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | SD | MET- 164 | 3.73 | 0 | Hydrophobic |
O5' | ND2 | ASN- 173 | 2.98 | 161.83 | H-Bond (Protein Donor) |
O5' | OE1 | GLU- 184 | 2.56 | 174.28 | H-Bond (Ligand Donor) |
O3' | ND2 | ASN- 186 | 3.17 | 134.67 | H-Bond (Protein Donor) |
C2' | CE3 | TRP- 260 | 3.6 | 0 | Hydrophobic |
C3' | CB | TRP- 260 | 3.99 | 0 | Hydrophobic |
C5' | CD2 | TRP- 260 | 3.69 | 0 | Hydrophobic |
O3' | OD1 | ASP- 261 | 2.69 | 151.37 | H-Bond (Ligand Donor) |
O2' | CA | CA- 328 | 2.58 | 0 | Metal Acceptor |
O3' | CA | CA- 328 | 2.41 | 0 | Metal Acceptor |