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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g11 P9C 3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g11 P9C3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.980
2gfx PMN3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.916
3g0y P9A3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.902
3hnz PMN3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.816
3ho2 N323-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.760
4jv3 N32Beta-ketoacyl synthase / 0.760
3ho9 N3A3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.757
4f32 N323-oxoacyl-[acyl-carrier-protein] synthase 2 / 0.757
3i8p 8403-oxoacyl-[acyl-carrier-protein] synthase 2 2.3.1.179 0.753