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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fz1 B98 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fz1 B98Cyclin-dependent kinase 2 2.7.11.22 0.915
3f7z 34OGlycogen synthase kinase-3 beta 2.7.11.26 0.709
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.703
2vth LZ2Cyclin-dependent kinase 2 2.7.11.22 0.691
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.690
3qqg X06Cyclin-dependent kinase 2 2.7.11.22 0.687
4b7t CWTGlycogen synthase kinase-3 beta 2.7.11.26 0.676
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.670
3ma3 01ISerine/threonine-protein kinase pim-1 2.7.11.1 0.661
3q3b 55EGlycogen synthase kinase-3 beta 2.7.11.26 0.660
1nxk STUMAP kinase-activated protein kinase 2 2.7.11.1 0.654
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.653
4f9c 0SXCell division cycle 7-related protein kinase 2.7.11.1 0.653
4mbl 26LSerine/threonine-protein kinase pim-1 2.7.11.1 0.653
3oog YTPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650