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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fuf BES Leukotriene A-4 hydrolase 3.3.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 1.162
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 1.114
3ftx BESLeukotriene A-4 hydrolase 3.3.2.6 1.043
4gaa BESLeukotriene A(4) hydrolase / 0.979
4xmx BESAminopeptidase N 3.4.11.2 0.920
2hpt BESAminopeptidase N 3.4.11.2 0.904
2dqm BESAminopeptidase N 3.4.11.2 0.889
2xq0 BESLeukotriene A-4 hydrolase homolog 3.3.2.6 0.860
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.856
3q44 D50M1 family aminopeptidase 3.4.11 0.846
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.839
4fkk BESAminopeptidase N 3.4.11.2 0.809
3q43 D66M1 family aminopeptidase 3.4.11 0.801
3ebi BEYM1 family aminopeptidase 3.4.11 0.723
2zxg S23Aminopeptidase N 3.4.11.2 0.704
3chs 4BULeukotriene A-4 hydrolase 3.3.2.6 0.689
4jbs P52Endoplasmic reticulum aminopeptidase 2 3.4.11 0.669
4k5o 1OTM1 family aminopeptidase 3.4.11 0.661
3kmc 403Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.659
3h8g BESCytosol aminopeptidase 3.4.11.1 0.651