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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ewk FAD Sensory box histidine kinase/response regulator

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ewk FADSensory box histidine kinase/response regulator / 1.242
2gj3 FADNitrogen fixation regulatory protein 2.7.13.3 0.711
4hh0 FMNAppA protein / 0.681
4ybn FADFlavin-nucleotide-binding protein / 0.670
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.665
2ard FDAFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.664
5kbw RBFRiboflavin transporter RibU / 0.654
2yqu FADDihydrolipoyl dehydrogenase / 0.653
3atq FDAConserved Archaeal protein / 0.653
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.652
4hhd FMNPhototropin-1 2.7.11.1 0.652
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.651