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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eof FMN Putative oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eof FMNPutative oxidase / 1.095
2bkj FMNNADPH-flavin oxidoreductase / 0.823
2wzw FMNNitroreductase NfnB / 0.814
2wzv FMNNitroreductase NfnB / 0.809
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.786
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.770
3eo8 FMNPutative nitroreductase / 0.769
4ttc FMNIodotyrosine deiodinase 1 / 0.758
3koq FMNPutative nitroreductase / 0.734
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.733
4qly FMNEnone reductase CLA-ER / 0.723
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.721
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.716
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.713
4ttb FMNIodotyrosine deiodinase 1 / 0.711
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.707
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.703
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.702
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.698
3ge6 FMNNitroreductase / 0.698
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.678
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.675
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.667
3e39 FMNNitroreductase / 0.666
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.653
2ifa FMNUncharacterized protein / 0.650