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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3el2 ATP Actin-5C

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3el2 ATPActin-5C / 1.063
3eku ATPActin-5C / 0.999
3mn6 ATPActin-5C / 0.998
3mn9 ATPActin-5C / 0.967
1dej ATPMajor actin / 0.965
4k41 ATPActin, alpha skeletal muscle / 0.965
1s22 ATPActin, alpha skeletal muscle / 0.964
3chw ATPMajor actin / 0.960
1c0f ATPMajor actin / 0.957
4cbx ATPActin-2 / 0.954
3eks ATPActin-5C / 0.950
1qz5 ATPActin, alpha skeletal muscle / 0.949
3a5o ATPMajor actin / 0.949
2q97 ATPActin, alpha skeletal muscle / 0.944
2q36 ATPActin, alpha skeletal muscle / 0.942
3mn7 ATPActin-5C / 0.942
3m6g ATPActin, alpha skeletal muscle / 0.937
2oan ATPActin, cytoplasmic 1 / 0.928
4pkg ATPActin, alpha skeletal muscle / 0.928
1mdu ATPActin, alpha skeletal muscle / 0.907
4pl8 ATPActin, alpha skeletal muscle / 0.902
4pki ATPActin, alpha skeletal muscle / 0.901
2a41 ATPActin, alpha skeletal muscle / 0.899
3m1f ATPActin, alpha skeletal muscle / 0.896
1t44 ATPActin, alpha skeletal muscle / 0.895
5ce3 ATPActin / 0.882
3tu5 ATPActin, alpha skeletal muscle / 0.880
3w3d ATPActin, gamma-enteric smooth muscle / 0.880
1eqy ATPActin, alpha skeletal muscle / 0.876
4ci6 ATPActin / 0.871
3ffk ATPActin, alpha skeletal muscle / 0.856
1rgi ATPActin, alpha skeletal muscle / 0.849
2p9k ATPActin-related protein 2 / 0.846
1kxp ATPActin, alpha skeletal muscle / 0.845
4b1v ATPActin, alpha skeletal muscle / 0.844
1nlv ATPMajor actin / 0.843
1wua ATPActin, alpha skeletal muscle / 0.831
1lot ATPActin, alpha skeletal muscle / 0.827
1atn ATPActin, alpha skeletal muscle / 0.825
1ijj ATPActin, alpha skeletal muscle / 0.823
4m63 ATPActin-5C / 0.822
3daw ATPActin, alpha skeletal muscle / 0.820
3wt0 ATPCell division protein FtsA / 0.798
1nmd ATPMajor actin / 0.786
1yxq ATPActin, alpha skeletal muscle / 0.786
1h1v ATPActin, alpha skeletal muscle / 0.780
2v51 ATPActin, alpha skeletal muscle / 0.762
4pkh ADPActin, alpha skeletal muscle / 0.752
1nm1 ATPMajor actin / 0.742
3a5m ATPMajor actin / 0.734
1rfq ATPActin, alpha skeletal muscle / 0.730
4jhd ANPActin-5C / 0.721
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.720
3d2e ATPHeat shock protein homolog SSE1 / 0.681
4k43 ADPActin, alpha skeletal muscle / 0.675
3ldo ANP78 kDa glucose-regulated protein / 0.669
4yj2 GTPTubulin alpha-1B chain / 0.660
1ngh ATPHeat shock cognate 71 kDa protein / 0.658
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.658
4iij GTPTubulin alpha-1B chain / 0.658
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.657
4o4l GTPTubulin alpha-1B chain / 0.656
2fsn ADPArchaeal actin homolog / 0.655
3u4l ATPActin, cytoplasmic 1 / 0.655
3wqt ANPCell division protein FtsA / 0.655
4fvq ATPTyrosine-protein kinase JAK2 / 0.655
2ji9 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.652