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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eek 53S Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eek 53SUncharacterized protein / 1.252
3eej 53RUncharacterized protein / 1.161
3eem 53VUncharacterized protein / 1.119
3eel 53TUncharacterized protein / 1.039
4h98 14QUncharacterized protein / 0.810
3qlx QLRUncharacterized protein / 0.719
4kak 06UDihydrofolate reductase 1.5.1.3 0.714
3cse N22Uncharacterized protein / 0.711
3qlz QLZUncharacterized protein / 0.685
1m7a MQUDihydrofolate reductase 1.5.1.3 0.676
3d80 Q22Dihydrofolate reductase 1.5.1.3 0.667
1ly3 COGDihydrofolate reductase 1.5.1.3 0.656
1s3v TQDDihydrofolate reductase 1.5.1.3 0.652