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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dys 5GP High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dys 5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 1.002
3dy8 5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.843
3dyl PCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.837
3dyn PCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.772
3dyq PCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.714
4g2j 0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.686
3jsi WTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.668
4u0m GTPCyclic GMP-AMP synthase / 0.666
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.663
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.656
2pml ANPUncharacterized protein / 0.653
4g2l 0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.653
3tw6 ADPPyruvate carboxylase / 0.652
5iqf GDPBifunctional AAC/APH 2.3.1 0.652