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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dp9 BIG 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dp9 BIG5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 1.119
4wkb TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.952
1y6q TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3.2.2.9 0.938
4x24 TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.912
3eei MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.807
4e5i 0N9Polymerase acidic protein / 0.744
1zos MTM5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase / 0.743
4bmz MTAAminodeoxyfutalosine nucleosidase / 0.727
2qtg MTH5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 3.2.2.9 0.722
4e5f 0N7Polymerase acidic protein / 0.660
4o1b DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.652