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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dge ADP Sensor histidine kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dge ADPSensor histidine kinase / 1.060
2c2a ADPSensor histidine kinase / 0.706
4wud ANPDNA gyrase subunit B / 0.674
3sl2 ATPSensor histidine kinase WalK / 0.673
4biz ADPSensor histidine kinase CpxA / 0.670
4jau ADPSensor histidine kinase / 0.668
4prx ADPDNA gyrase subunit B / 0.665
2zkj ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.658
4bix ADPSensor histidine kinase CpxA / 0.657
1kor ANPArgininosuccinate synthase / 0.654
3d2r ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial 2.7.11.2 0.654
4i0b CMPcAMP-activated global transcriptional regulator CRP / 0.653
4wuc ANPDNA gyrase subunit B / 0.653
1gjv AGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial 2.7.11.4 0.650
1s16 ANPDNA topoisomerase 4 subunit B / 0.650