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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3daf FEG 5,10-methenyltetrahydromethanopterin hydrogenase 1.12.98.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3daf FEG5,10-methenyltetrahydromethanopterin hydrogenase 1.12.98.2 1.039
3dag FEG5,10-methenyltetrahydromethanopterin hydrogenase 1.12.98.2 1.013
3f47 I2C5,10-methenyltetrahydromethanopterin hydrogenase 1.12.98.2 0.944
3f46 I2C5,10-methenyltetrahydromethanopterin hydrogenase 1.12.98.2 0.922
3h65 I2C5,10-methenyltetrahydromethanopterin hydrogenase 1.12.98.2 0.874
5dx1 SFGHistone-arginine methyltransferase CARM1 / 0.660
3n1s 5GPPurine nucleoside phosphoramidase / 0.659
3grr SAHProbable ribosomal RNA small subunit methyltransferase A / 0.656