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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3da2 4MD Carbonic anhydrase 13 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3da2 4MDCarbonic anhydrase 13 4.2.1.1 1.020
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.725
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.702
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.699
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.696
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.695
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.695
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.693
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.683
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.682
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.678
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.677
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.675
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.672
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.670
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.664
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.662
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.661
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.660
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.659
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.657
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.655
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.655
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.655
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.654
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.654
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.653
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.653
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.653
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.651