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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d8v UD1 Bifunctional protein GlmU

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d8v UD1Bifunctional protein GlmU / 1.147
2v0i UD1Bifunctional protein GlmU / 0.868
1fwy UD1Bifunctional protein GlmU / 0.819
1hv9 UD1Bifunctional protein GlmU / 0.810
2oi6 UD1Bifunctional protein GlmU / 0.802
4g3p UD1Bifunctional protein GlmU / 0.789
3spt UD1Bifunctional protein GlmU / 0.763
4g3q UD1Bifunctional protein GlmU / 0.756
4ho6 UPGGlucose-1-phosphate thymidylyltransferase / 0.720
1g1l DAUGlucose-1-phosphate thymidylyltransferase / 0.716
4g3s UD1Bifunctional protein GlmU / 0.694
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 0.689
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.682
4ho5 DAUGlucose-1-phosphate thymidylyltransferase / 0.681
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.678
1iin UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.671
2uz3 TTPThymidine kinase / 0.658